SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project gregmisc.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

MSOfficeUtil

Read from and write to Excel, Save graphs into PowerPoint

  Functions for reading and writing data stored by Excel and for saving lattice graphs into PowerPoint. NOTE: These functions depend on Duncan Temple Langs DCOMClient package, which is available from http://www.omegahat.org/RDCOMClient.
  Version: 0.8.3 | Last change: 2007-10-22 04:24:28+02 | Rev.: 1196
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("MSOfficeUtil", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


RMCMC

General-purpose Markov Chain Monte Carlo for R

  This package allows users to easily specify and fit Bayesian models via Markov Chain Monte Carlo (MCMC). Models may be specified using standard Bayesian model "twiddle" notation. Functions are provided to convert these models into density functions and random generators, and to use these estimate the posterior density using a variety of MCMC algorithms, including the general Metropolis-Hastings and Metropolis algorithms.
  Version: 0.1.0 | Last change: 2007-10-22 04:24:28+02 | Rev.: 1196
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("RMCMC", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


SASxport

Read and Write SAS XPORT Files

  Functions for reading, listing the contents of, and writing SAS xport format files. The functions support reading and writing of either individual data frames or sets of data frames. Further, a mechanism has been provided for customizing how variables of different data types are stored.
  Version: 1.5.4 | Last change: 2017-05-25 00:09:12+02 | Rev.: 2147
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get SASxport 1.5.3 from CRAN
  R install command: install.packages("SASxport", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


SII

Calculate ANSI S3.5-1997 Speech Intelligibility Index

  This package calculates ANSI S3.5-1997 Speech Intelligibility Index (SII), a standard method for computing the intelligibility of speech from acoustical measurements of speech, noise, and hearing thresholds. This package includes data frames corresponding to Tables 1 - 4 in the ANSI standard as well as a function utilizing these tables and user-provided hearing threshold and noise level measurements to compute the SII score. The methods implemented here extend the standard computations to allow calculation of SII when the measured frequencies do not match those required by the standard by applying interpolation to obtain values for the required frequencies -- Development of this package was funded by the Center for Bioscience Education and Technology (CBET) of the Rochester Institute of Technology (RIT).
  Version: 1.0.3 | Last change: 2015-05-26 18:24:09+02 | Rev.: 2032
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get SII 1.0.3 from CRAN
  R install command: install.packages("SII", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


bwRF

Efficent Random Forests models

  Efficent code for fitting Random Forests models
  Version: 0.1.1 | Last change: 2007-10-22 04:24:28+02 | Rev.: 1196
  Download: linux(.tar.gz) | windows(.zip) | Build status: Failed to build
  R install command: install.packages("bwRF", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


fork

R Functions for Handling Multiple Processes

  These functions provides simple wrappers around the Unix process management API calls: fork, signal, wait, waitpid, kill, and _exit. This enables construction of programs that utilize and mange multiple concurrent processes.
  Version: 1.2.5 | Last change: 2016-08-12 19:38:13+02 | Rev.: 2135
  Download: linux(.tar.gz) | windows(.zip) | Build status: Failed to build
  R install command: install.packages("fork", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


gdata

Various R Programming Tools for Data Manipulation

  Various R programming tools for data manipulation, including: - medical unit conversions (ConvertMedUnits, MedUnits), - combining objects (bindData, cbindX, combine, interleave), - character vector operations (centerText, startsWith, trim), - factor manipulation (levels, reorder.factor, mapLevels), - obtaining information about R objects (object.size, elem, env, humanReadable, is.what, ll, keep, ls.funs, Args,nPairs, nobs), - manipulating MS-Excel formatted files (read.xls, installXLSXsupport, sheetCount, xlsFormats), - generating fixed-width format files (write.fwf), - extricating components of date & time objects (getYear, getMonth, getDay, getHour, getMin, getSec), - operations on columns of data frames (matchcols, rename.vars), - matrix operations (unmatrix, upperTriangle, lowerTriangle), - operations on vectors (case, unknownToNA, duplicated2, trimSum), - operations on data frames (frameApply, wideByFactor), - value of last evaluated expression (ans), and - wrapper for sample that ensures consistent behavior for both scalar and vector arguments (resample).
  Version: 2.18.0 | Last change: 2017-06-06 19:18:49+02 | Rev.: 2157
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get gdata 2.18.0 from CRAN
  R install command: install.packages("gdata", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


gmodels

Various R programming tools for model fitting

  Various R programming tools for model fitting
  Version: 2.16.0 | Last change: 2017-06-13 01:53:33+02 | Rev.: 2167
  Download: linux(.tar.gz) | windows(.zip) | Build status: Failed to build | Stable Release: Get gmodels 2.16.2 from CRAN
  R install command: install.packages("gmodels", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


Old Version: 2.16.2 | Last change: 2015-07-22 01:24:07
Old Version Download: linux(.tar.gz) | windows(.zip)

gplots

Various R Programming Tools for Plotting Data

  Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as (bandplot, wapply), - enhanced versions of standard plots (barplot2, boxplot2, heatmap.2, smartlegend), - manipulating colors (col2hex, colorpanel, redgreen, greenred, bluered, redblue, rich.colors), - calculating and plotting two-dimensional data summaries (ci2d, hist2d), - enhanced regression diagnostic plots (lmplot2, residplot), - formula-enabled interface to stats::lowess function (lowess), - displaying textual data in plots (textplot, sinkplot), - plotting a matrix where each cell contains a dot whose size reflects the relative magnitude of the elements (balloonplot), - plotting "Venn" diagrams (venn), - displaying Open-Office style plots (ooplot), - plotting multiple data on same region, with separate axes (overplot), - plotting means and confidence intervals (plotCI, plotmeans), - spacing points in an x-y plot so they dont overlap (space).
  Version: 3.0.3 | Last change: 2016-08-12 19:38:13+02 | Rev.: 2135
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get gplots 3.0.1 from CRAN
  R install command: install.packages("gplots", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


gregmisc

Gregs Miscellaneous Functions

  Description: The former gregmisc bundle is a repository for a variety of useful functions. The gregmisc package has been split into a set of more focused packages: gdata, gmodels, gplots, gtools. The purpose of this new gregmisc is to provide an easy way to access the original combined functionality. To this end, it simply depends on all of the new packages so that these will installed/loaded when this package is installed/loaded.
  Version: 2.1.5 | Last change: 2013-06-29 00:00:17+02 | Rev.: 1689
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("gregmisc", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


gtools

Various R Programming Tools

  Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages (ask, checkRVersion, getDependencies, keywords, scat), - calculate the logit and inverse logit transformations (logit, inv.logit), - test if a value is missing, empty or contains only NA and NULL values (invalid), - manipulate Rs .Last function (addLast), - define macros (defmacro), - detect odd and even integers (odd, even), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII (ASCIIfy), - perform a binary search (binsearch), - sort strings containing both numeric and character components (mixedsort), - create a factor variable from the quantiles of a continuous variable (quantcut), - enumerate permutations and combinations (combinations, permutation), - calculate and convert between fold-change and log-ratio (foldchange, logratio2foldchange, foldchange2logratio), - calculate probabilities and generate random numbers from Dirichlet distributions (rdirichlet, ddirichlet), - apply a function over adjacent subsets of a vector (running), - modify the TCP\_NODELAY (de-Nagle) flag for socket objects, - efficient rbind of data frames, even if the column names dont match (smartbind), - generate significance stars from p-values (stars.pval), - convert characters to/from ASCII codes.
  Version: 3.7.0 | Last change: 2017-06-14 21:44:49+02 | Rev.: 2170
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get gtools 3.5.0 from CRAN
  R install command: install.packages("gtools", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


namespace

Provide namespace managment functions not (yet) present in base R

  This package provides user-level functions to manage namespaces not (yet) available in base R: registerNamespace, unregisterNamespace, makeNamespace, and getRegisteredNamespace (makeNamespaces is extracted from the R base package source code: src/library/base/R/namespace.R)
  Version: 0.9.1 | Last change: 2012-09-19 19:17:15+02 | Rev.: 1615
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get namespace 0.9.1 from CRAN
  R install command: install.packages("namespace", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


ssize

Estimate Microarry Sample Size

  Functions for computing and displaying sample size information for gene expression arrays.
  Version: 1.1.1 | Last change: 2007-10-22 04:24:28+02 | Rev.: 1196
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("ssize", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


ssize.sim

Estimate Effectivenes of Microarry Sample Size Estimation via Simulation

  Functions for evaluating the performance microarray sample size estimation procedures via simulation, as used in Warnes GR, Liu P, "Microarray Sample Size Estimation", submitted to Bioinformatics, Jan 2005
  Version: 1.0.1 | Last change: 2015-07-22 02:48:51+02 | Rev.: 2062
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("ssize.sim", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
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3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
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