SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project OOMPA.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

BetaModels

Bayesian Analysis of Different Rates in Different Groups

  Test for different proportions (rates) in different groups using a Bayesian model in which all rate parameters follow a beta distribution and are selected from a common hyperdistribution.
  Version: 0.1.9 | Last change: 2018-10-26 12:42:57+02 | Rev.: 426
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("BetaModels", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


ClassComparison

Classes and Methods for "Class Comparison" Problems on Microarrays

  Defines the classes used for "class comparison" problems in the OOMPA project (). Class comparison includes tests for differential expression; see Simons book for details on typical problem types.
  Version: 3.1.6 | Last change: 2018-10-16 14:45:30+02 | Rev.: 421
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get ClassComparison 3.1.6 from CRAN
  R install command: install.packages("ClassComparison", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


ClassDiscovery

Classes and Methods for "Class Discovery" with Microarrays or Proteomics

  Defines the classes used for "class discovery" problems in the OOMPA project (). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
  Version: 3.3.10 | Last change: 2018-12-03 13:58:40+01 | Rev.: 428
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get ClassDiscovery 3.3.9 from CRAN
  R install command: install.packages("ClassDiscovery", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


Polychrome

Qualitative Palettes with Many Colors

  Tools for creating, viewing, and assessing qualitative palettes with many (20-30 or more) colors.
  Version: 1.2.0 | Last change: 2019-03-17 18:20:09+01 | Rev.: 433
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get Polychrome 1.2.0 from CRAN
  R install command: install.packages("Polychrome", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


PreProcess

Basic Functions for Pre-Processing Microarrays

  Provides classes to pre-process microarray gene expression data as part of the OOMPA collection of packages described at .
  Version: 3.1.5 | Last change: 2018-05-16 22:42:41+02 | Rev.: 397
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get PreProcess 3.1.5 from CRAN
  R install command: install.packages("PreProcess", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


TailRank

The Tail-Rank Statistic

  Implements the tail-rank statistic for selecting biomarkers from a microarray data set, an efficient nonparametric test focused on the distributional tails. See .
  Version: 3.2.1 | Last change: 2018-05-17 16:03:16+02 | Rev.: 402
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get TailRank 3.2.1 from CRAN
  R install command: install.packages("TailRank", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oompaBase

Class Unions, Matrix Operations, and Color Schemes for OOMPA

  Provides the class unions that must be preloaded in order for the basic tools in the OOMPA (Object-Oriented Microarray and Proteomics Analysis) project to be defined and loaded. It also includes vectorized operations for row-by-row means, variances, and t-tests. Finally, it provides new color schemes. Details on the packages in the OOMPA project can be found at .
  Version: 3.2.6 | Last change: 2018-05-16 22:24:31+02 | Rev.: 396
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get oompaBase 3.2.6 from CRAN
  R install command: install.packages("oompaBase", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oompaData

Data to Illustrate OOMPA Algorithms

  This is a data-only package to provide example data for other packages that are part of the "Object-Oriented Microrray and Proteomics Analysis" suite of packages. These are described in more detail at the package URL.
  Version: 3.1.1 | Last change: 2018-05-17 16:18:25+02 | Rev.: 405
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get oompaData 3.1.1 from CRAN
  R install command: install.packages("oompaData", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

If your package is not shown on this page or not building, then check the build system status report.

Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge