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51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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20. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. |
- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2011-03-07 18:54 |
21. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2011-04-19 11:00 |
22. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2011-02-18 14:08 |
23. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Graphical Models [Filter]
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Registered: 2011-06-10 12:24 |
24. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details. |
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-04-23 07:05 |
25. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Multiple Testing [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2010-03-21 02:01 |
26. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
- Development Status : 4 - Beta [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
27. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. |
- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
28. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2009-02-18 10:01 |
29. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bayesian Statistics [Filter]
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Registered: 2011-10-11 08:51 |
30. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Programming Language : R [Filter]
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Registered: 2010-03-10 09:59 |
31. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2009-11-04 09:16 |
32. modEvA - modEvA is an R package for species distribution model evaluation and analysis. |
- Development Status : 4 - Beta [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-04-04 11:51 |
33. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2011-09-14 03:27 |
34. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : Microsoft : Windows [Filter]
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Registered: 2007-12-03 15:58 |
35. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
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Registered: 2010-09-06 17:05 |
36. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data |
- Development Status : 4 - Beta [Filter]
- Environment : Other Environment [Filter]
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- Programming Language : Python [Filter]
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Registered: 2017-02-15 20:58 |
37. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]
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Registered: 2010-05-14 17:13 |
38. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Programming Language : R [Filter]
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- Topic : Machine Learning [Filter]
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Registered: 2014-02-03 16:15 |
39. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2014-02-03 16:37 |
51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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