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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-10-26 14:24 |
1. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Graphical Models [Filter]
- Topic : Time Series [Filter]
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Registered: 2011-06-10 12:24 |
2. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2014-02-03 16:15 |
3. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2014-02-03 16:37 |
4. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2013-08-29 17:48 |
5. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Multiple Testing [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2010-03-21 02:01 |
6. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
- Development Status : 4 - Beta [Filter]
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- Programming Language : Perl [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-11-21 21:46 |
7. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details. |
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Registered: 2010-04-23 07:05 |
8. cvrcalc - A Cardiovascular Risk's Calculator by Scores |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-08-02 12:18 |
9. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : French [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
10. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2020-04-25 19:28 |
11. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach. |
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Registered: 2013-07-26 14:26 |
12. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. |
- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Regression Models [Filter]
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Registered: 2013-07-05 08:44 |
13. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-09-06 17:05 |
14. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
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- Topic : Genetics [Filter]
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Registered: 2011-09-14 03:27 |
15. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2012-06-13 23:35 |
16. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : Microsoft : Windows [Filter]
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Registered: 2007-12-03 15:58 |
17. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2009-02-18 10:01 |
18. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data |
- Development Status : 4 - Beta [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved [Filter]
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- Programming Language : Python [Filter]
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Registered: 2017-02-15 20:58 |
19. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data |
- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2008-10-09 17:22 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>