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54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2010-10-09 02:03 |
1. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg> |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2009-06-05 00:29 |
2. GenABEL - A suite of packages for statistical genomics |
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2009-08-12 17:07 |
3. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2020-04-25 19:28 |
4. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data |
- Development Status : 4 - Beta [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved [Filter]
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- Programming Language : Python [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2017-02-15 20:58 |
5. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure. |
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics [Filter]
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Registered: 2013-12-19 15:12 |
6. Customized Gene Set Enrichment Analysis - Customized Gene Set Enrichment Analysis, including GO/KEGG. |
- Development Status : 3 - Alpha [Filter]
- Environment : Win32 (MS Windows) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2009-07-07 03:54 |
7. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt. |
- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
8. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2012-06-13 23:35 |
9. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface. |
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- License : OSI Approved : Artistic License [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis [Filter]
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Registered: 2013-08-29 17:48 |
10. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
- Development Status : 4 - Beta [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
11. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2014-02-03 16:37 |
12. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2014-02-03 16:15 |
13. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. |
- Development Status : 1 - Planning [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2011-03-07 18:54 |
14. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures |
- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
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Registered: 2009-04-17 15:10 |
15. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Natural Language : German [Filter]
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Registered: 2010-03-05 10:51 |
16. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
- Development Status : 4 - Beta [Filter]
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Registered: 2012-07-12 22:01 |
17. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ |
- Development Status : 3 - Alpha [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Environmetrics [Filter]
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Registered: 2016-10-08 19:20 |
18. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2010-09-06 17:05 |
19. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-02-18 15:57 |
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>