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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator. |
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Registered: 2009-07-30 17:27 |
1. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
- Development Status : 4 - Beta [Filter]
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Registered: 2009-11-30 09:36 |
2. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. |
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Registered: 2011-10-11 08:51 |
3. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-10-08 19:20 |
4. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
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- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
5. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class. |
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Registered: 2008-07-24 04:32 |
6. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-02-18 15:57 |
7. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978). |
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Registered: 2015-07-04 09:37 |
8. modEvA - modEvA is an R package for species distribution model evaluation and analysis. |
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Registered: 2014-04-04 11:51 |
9. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes. |
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Registered: 2014-02-03 16:15 |
10. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model. |
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Registered: 2014-02-03 16:37 |
11. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface. |
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Registered: 2013-08-29 17:48 |
12. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
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Registered: 2013-11-21 21:46 |
13. cvrcalc - A Cardiovascular Risk's Calculator by Scores |
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Registered: 2013-08-02 12:18 |
14. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis. |
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Registered: 2020-04-25 19:28 |
15. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach. |
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Registered: 2013-07-26 14:26 |
16. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2013-07-05 08:44 |
17. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. |
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Registered: 2012-06-13 23:35 |
18. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data |
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Registered: 2008-10-09 17:22 |
19. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions. |
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Registered: 2011-05-10 07:45 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>