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51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-10-09 02:03 |
1. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data
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- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2008-10-09 17:22 |
2. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
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- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Regression Models [Filter]
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Registered: 2013-07-05 08:44 |
3. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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- Development Status : 1 - Planning [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2008-07-24 04:32 |
4. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-04-17 15:10 |
5. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2011-12-05 20:42 |
6. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2009-06-05 00:29 |
7. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
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- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2011-04-19 11:00 |
8. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference
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- Development Status : 4 - Beta [Filter]
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Registered: 2007-12-03 15:58 |
9. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2012-06-13 23:35 |
10. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Natural Language : German [Filter]
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Registered: 2010-03-05 10:51 |
11. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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- Natural Language : Spanish [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
- Topic : Spatial Data & Statistics [Filter]
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Registered: 2015-07-04 09:37 |
12. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Multivariate Distributions [Filter]
- Topic : Multivariate Statistics : Unsupervised Classification [Filter]
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Registered: 2011-05-10 07:45 |
13. GenABEL - A suite of packages for statistical genomics
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2009-08-12 17:07 |
14. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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Registered: 2010-10-26 14:24 |
15. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.
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- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
16. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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- Programming Language : Perl [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2013-11-21 21:46 |
17. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.
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- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
18. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2016-02-18 15:57 |
19. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Python [Filter]
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Registered: 2017-02-15 20:58 |
51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
