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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
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Activity Percentile: 11.76
Registered: 2013-08-29 17:48 |
1. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
2. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2011-02-18 14:08 |
3. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-03-10 09:59 |
4. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-06-10 12:24 |
5. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach.
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Registered: 2013-07-26 14:26 |
6. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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- Development Status : 4 - Beta [Filter]
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Registered: 2011-10-07 17:59 |
7. modEvA - modEvA is an R package for species distribution model evaluation and analysis.
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- Development Status : 4 - Beta [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-04-04 11:51 |
8. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2008-10-09 17:22 |
9. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-10-26 14:24 |
10. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2011-12-05 20:42 |
11. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-03 15:58 |
12. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bayesian Statistics [Filter]
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Registered: 2011-10-11 08:51 |
13. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : High Performance Computing : Grid Computing [Filter]
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Activity Percentile: 0.00
Registered: 2009-11-30 09:36 |
14. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Multivariate Distributions [Filter]
- Topic : Multivariate Statistics : Unsupervised Classification [Filter]
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Registered: 2011-05-10 07:45 |
15. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.
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- Development Status : 4 - Beta [Filter]
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- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
16. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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Registered: 2009-04-17 15:10 |
17. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Perl [Filter]
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Registered: 2013-11-21 21:46 |
18. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Natural Language : German [Filter]
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Registered: 2010-03-05 10:51 |
19. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
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Registered: 2012-10-16 20:41 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
