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32 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2011-02-18 14:08 |
1. diagnosis - An R package for evaluation of the accuracy of diagnostic tests or biomarkers for classification (screening or diagnosis) and prediction (risk or prognosis). |
- Development Status : 1 - Planning [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2009-03-08 23:28 |
2. Multiprecision Complex Number Arithmetic - An interface to the mpc library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Operating System : POSIX [Filter]
- Programming Language : R [Filter]
- Topic : Numerical Analysis : Numerical Methods in Complex Analysis [Filter]
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Registered: 2011-03-30 06:37 |
3. Belief Propagation - This project seeks to implement generic belief propagation in order to do efficient on graphical models. It will also allow for optimizations using parallel computing and efficient memory management. |
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Graphical Models [Filter]
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Registered: 2010-06-25 13:25 |
4. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/ |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : No Input/Output (Daemon) [Filter]
- Environment : Web Environment [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Database [Filter]
- Topic : Genetics [Filter]
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Registered: 2009-05-19 20:01 |
5. stdt - Screening techniques |
- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
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Registered: 2008-03-01 02:02 |
6. speedR - speedR:An R-package for interactive GUI-based data import, filtering and complex ready-to-use code generation to speed up your productivity. speedR recognizes file formats like Excel (.xls and .xlsx), open office calc, .csv and .txt files automatically. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Programming Language : Java [Filter]
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- Topic : Connectivity [Filter]
- Topic : Graphical User Interface [Filter]
- Topic : Software Development : Code Generators [Filter]
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Registered: 2010-10-29 08:48 |
7. RMVL - Mappable vector library provides convenient way to access large datasets on solid state drives. This bypasses limitation of physical memory size as well as limited bandwidth of database interfaces. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface. The data is memory mapped into R and then accessed using usual R list and array subscription operators. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as standalone C library. libMVL has simple C API making it easy to interchange of datasets with outside programs. |
- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
- Topic : Database [Filter]
- Topic : High Performance Computing : Large Memory [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2021-08-19 02:16 |
8. mvabund: multivariate analysis 4 ecology - A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Environmetrics [Filter]
- Topic : Multivariate Statistics : Modelling Non-Gaussian Data [Filter]
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Registered: 2012-05-18 05:57 |
9. QuACN - This package includes methods for the analysis of complex networks. To characterize complex networks structurally we implemented topological measures for graphs. It includes information and non-information theoretic network measures. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
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Registered: 2010-05-18 12:37 |
10. lpSolveAPI - An R interface for lp_solve, a Mixed Integer Linear Programming (MILP) solver with support for pure linear, (mixed) integer/binary, semi-continuous and special ordered sets (SOS) models. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2008-02-08 10:47 |
11. hyperSpec - hyperSpec is a R package to handle hyperspectral data, i.e. spectra plus further information such as spatial location, time, concentrations, etc.
Such data are frequently encountered in Raman, IR, NIR, UV/VIS, NMR, mass spectroscopy, AAS / AES, ... |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Chemoinformatics [Filter]
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Registered: 2009-02-23 09:27 |
12. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Programming Language : R [Filter]
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Registered: 2014-05-31 04:36 |
13. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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Registered: 2009-12-15 12:39 |
14. basisR - This package provides access to the web-services exposed by the BASIS system. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Operating System : Microsoft : Windows [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-12-15 12:37 |
15. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Operating System : Microsoft [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
16. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach. |
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- Intended Audience : Other Audience [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2013-07-26 14:26 |
17. refnet - Bibliometric Tools for R - This package and its tools are currently designed to read, analyze and visualize Thomson-Reuters Web of Knowledge/Science, ISI and SCOPUS format reference data files. Social network analyses, geocoding of addresses and spatial visualization are supported. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Programming Language : R [Filter]
- Topic : Social Sciences [Filter]
- Topic : Spatial Data & Statistics [Filter]
- Topic : Text [Filter]
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Registered: 2013-06-03 18:44 |
18. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
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Registered: 2013-04-11 08:27 |
19. Word lists for psychology experiments - This package collects several classical word pools used
most often to provide lists of words in psychological
studies of learning and memory. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Topic : Datasets [Filter]
- Topic : Social Sciences [Filter]
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Registered: 2012-11-27 19:49 |
32 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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