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31 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. QuACN - This package includes methods for the analysis of complex networks. To characterize complex networks structurally we implemented topological measures for graphs. It includes information and non-information theoretic network measures. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Topic : Bioinformatics : Medical Science [Filter]
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Registered: 2010-05-18 12:37 |
1. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge. |
- Development Status : 1 - Planning [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics [Filter]
- Topic : Datasets [Filter]
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Registered: 2010-02-09 15:03 |
2. speedR - speedR:An R-package for interactive GUI-based data import, filtering and complex ready-to-use code generation to speed up your productivity. speedR recognizes file formats like Excel (.xls and .xlsx), open office calc, .csv and .txt files automatically. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : MacOS [Filter]
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- Operating System : POSIX : Linux [Filter]
- Programming Language : Java [Filter]
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- Topic : Connectivity [Filter]
- Topic : Graphical User Interface [Filter]
- Topic : Software Development : Code Generators [Filter]
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Registered: 2010-10-29 08:48 |
3. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Topic : Bioinformatics [Filter]
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Registered: 2009-12-15 12:39 |
4. basisR - This package provides access to the web-services exposed by the BASIS system. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Topic : Bioinformatics : Mathematics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-12-15 12:37 |
5. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Operating System : Microsoft [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
6. rmodest - Rmodest is a package that will allow you to easily fit mortality functions to your survival data, and to test hypotheses about your data. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2008-04-24 04:24 |
7. stdt - Screening techniques |
- Development Status : 1 - Planning [Filter]
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Registered: 2008-03-01 02:02 |
8. RMVL - Mappable vector library provides convenient way to access large datasets on solid state drives. This bypasses limitation of physical memory size as well as limited bandwidth of database interfaces. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface. The data is memory mapped into R and then accessed using usual R list and array subscription operators. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as standalone C library. libMVL has simple C API making it easy to interchange of datasets with outside programs. |
- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Database [Filter]
- Topic : High Performance Computing : Large Memory [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2021-08-19 02:16 |
9. mvabund: multivariate analysis 4 ecology - A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Environmetrics [Filter]
- Topic : Multivariate Statistics : Modelling Non-Gaussian Data [Filter]
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Registered: 2012-05-18 05:57 |
10. lpSolveAPI - An R interface for lp_solve, a Mixed Integer Linear Programming (MILP) solver with support for pure linear, (mixed) integer/binary, semi-continuous and special ordered sets (SOS) models. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2008-02-08 10:47 |
11. hyperSpec - hyperSpec is a R package to handle hyperspectral data, i.e. spectra plus further information such as spatial location, time, concentrations, etc.
Such data are frequently encountered in Raman, IR, NIR, UV/VIS, NMR, mass spectroscopy, AAS / AES, ... |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Chemoinformatics [Filter]
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Registered: 2009-02-23 09:27 |
12. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2014-05-31 04:36 |
13. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach. |
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- Intended Audience : Other Audience [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2013-07-26 14:26 |
14. refnet - Bibliometric Tools for R - This package and its tools are currently designed to read, analyze and visualize Thomson-Reuters Web of Knowledge/Science, ISI and SCOPUS format reference data files. Social network analyses, geocoding of addresses and spatial visualization are supported. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Social Sciences [Filter]
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- Topic : Text [Filter]
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Registered: 2013-06-03 18:44 |
15. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
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- Topic : Genetics [Filter]
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Registered: 2013-04-11 08:27 |
16. Rcplex - Interface to the CPLEX optimization engine. Supports Linux and Windows. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
- Topic : Optimization : Mathematical Programming : Linear Programming [Filter]
- Topic : Optimization : Mathematical Programming : Quadratic Programming [Filter]
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Registered: 2008-08-04 05:27 |
17. SQL-based analysis for large surveys - Analysing large complex surveys, such as the American Community Survey, using R to generate SQL code for MonetDB. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
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- Operating System : POSIX : Linux [Filter]
- Programming Language : PL/SQL [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Database : R Interfaces [Filter]
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Registered: 2012-09-18 04:53 |
18. Spatiotemporal Data S4 class/meths - Spatiotemporal data S4 objects, methods, support for data with spatial and temporal components |
- Development Status : 1 - Planning [Filter]
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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- Topic : Spatial Data & Statistics : Classes for Spatial Data [Filter]
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Registered: 2009-09-26 15:38 |
19. Bertin matrices - Matrix manipulation and display, following the proposals of J. Bertin.
Bertin’s permutation matrices give simple and effective tools for the graphical analysis of data matrices or tables. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Graphics : Applications [Filter]
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- Topic : Graphics : Plotting [Filter]
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Registered: 2007-11-29 20:50 |
31 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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