Software Map
Project Tree
Now limiting view to projects in the following categories:
Topic :: Bioinformatics [Remove This Filter]
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.
|
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-18 10:18 |
1. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-02-02 00:51 |
2. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
|
- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
|
Activity Percentile: 0.00
Registered: 2014-10-23 15:21 |
3. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
|
- Development Status : 6 - Mature [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Environmetrics [Filter]
|
Activity Percentile: 0.00
Registered: 2021-07-15 19:48 |
4. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
|
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Spanish [Filter]
- Operating System : OS Independent [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Time Series [Filter]
|
Activity Percentile: 0.00
Registered: 2010-08-30 08:56 |
5. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2016-04-01 13:46 |
6. hyperSpec - hyperSpec is a R package to handle hyperspectral data, i.e. spectra plus further information such as spatial location, time, concentrations, etc.
Such data are frequently encountered in Raman, IR, NIR, UV/VIS, NMR, mass spectroscopy, AAS / AES, ...
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Chemoinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-02-23 09:27 |
7. CRImage - CRImage is a package to process and analyze biological images.
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-06-27 11:26 |
8. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
|
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
|
Activity Percentile: 0.00
Registered: 2014-02-05 10:27 |
9. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
|
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
10. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Datasets [Filter]
|
Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
11. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
|
Registered: 2012-11-27 16:58 |
12. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
13. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2010-09-03 21:34 |
14. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Software Development [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2008-02-20 20:34 |
15. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
|
Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
16. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-01-16 22:15 |
17. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
|
- Development Status : 1 - Planning [Filter]
- Environment : Other Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
|
Activity Percentile: 0.00
Registered: 2010-06-14 20:56 |
18. NameNeedle - Using Needleman-Wunsch to Match Sample Names
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Text [Filter]
|
Activity Percentile: 0.00
Registered: 2014-02-03 16:21 |
19. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
|
- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-08 10:31 |
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
