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Topic :: Bioinformatics [Remove This Filter]
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 16.67
Registered: 2014-02-03 16:21 |
1. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 8.33
Registered: 2011-05-13 20:48 |
2. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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- Development Status : 6 - Mature [Filter]
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Registered: 2014-10-23 15:21 |
3. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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- Development Status : 3 - Alpha [Filter]
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Registered: 2012-04-18 14:21 |
4. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
5. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Natural Language : German [Filter]
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Registered: 2013-05-29 18:34 |
6. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
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Registered: 2010-09-03 21:34 |
7. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Registered: 2013-04-11 08:27 |
8. CRImage - CRImage is a package to process and analyze biological images.
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Registered: 2010-06-27 11:26 |
9. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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Registered: 2009-11-20 09:49 |
10. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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Registered: 2010-06-28 19:28 |
11. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Registered: 2010-01-07 14:13 |
12. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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Registered: 2016-04-21 23:06 |
13. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2008-02-20 20:34 |
14. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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Registered: 2016-04-01 13:46 |
15. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
16. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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Registered: 2014-05-31 04:36 |
17. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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Registered: 2011-02-02 00:51 |
18. OrgMassSpecR: Organic Mass Spectrometry - Organic/biological mass spectrometry data analysis. The development version of OrgMassSpecR is on GitHub (https://github.com/OrgMassSpec) and the stable version is on CRAN (https://cran.r-project.org/). The R-Forge repository is an archive.
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Registered: 2009-04-28 20:04 |
19. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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Registered: 2021-07-15 19:48 |
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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