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28 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
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Registered: 2013-04-11 08:27 |
1. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
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Registered: 2010-01-07 14:13 |
2. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm |
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Registered: 2013-01-17 23:06 |
3. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals. |
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2012-11-27 16:58 |
4. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection. |
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Registered: 2012-11-27 16:51 |
5. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS. |
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Registered: 2009-10-20 01:21 |
6. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering. |
- Development Status : 4 - Beta [Filter]
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Registered: 2010-09-03 21:34 |
7. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data. |
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Registered: 2015-09-02 17:28 |
8. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/ |
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Registered: 2009-05-19 20:01 |
9. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer. |
- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-01-08 10:31 |
10. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry. |
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Registered: 2011-04-04 14:59 |
11. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis. |
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Registered: 2009-11-20 09:49 |
12. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas. |
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Registered: 2008-02-20 20:34 |
13. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets. |
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Registered: 2009-12-15 12:39 |
14. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees. |
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Registered: 2008-11-07 19:39 |
15. hyperSpec - hyperSpec is a R package to handle hyperspectral data, i.e. spectra plus further information such as spatial location, time, concentrations, etc.
Such data are frequently encountered in Raman, IR, NIR, UV/VIS, NMR, mass spectroscopy, AAS / AES, ... |
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Registered: 2009-02-23 09:27 |
16. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods. |
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Registered: 2008-07-23 21:21 |
17. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour. |
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Registered: 2010-08-30 08:56 |
18. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. |
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Registered: 2014-05-31 04:36 |
19. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed. |
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Registered: 2010-05-06 10:59 |
28 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>