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Topic :: Bioinformatics :: Statistics [Remove This Filter]
51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : French [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
1. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
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Registered: 2010-03-05 10:51 |
2. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2011-04-19 11:00 |
3. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2010-03-10 09:59 |
4. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
- Topic : Other/Nonlisted Topic [Filter]
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Registered: 2014-02-03 16:37 |
5. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2011-12-05 20:42 |
6. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Environmetrics [Filter]
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Registered: 2016-10-08 19:20 |
7. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2010-04-01 17:54 |
8. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.
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Registered: 2012-07-03 03:50 |
9. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Graphical Models [Filter]
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Registered: 2011-06-10 12:24 |
10. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-04-17 15:10 |
11. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2010-10-09 02:03 |
12. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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- Natural Language : Spanish [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
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Registered: 2015-07-04 09:37 |
13. GenABEL - A suite of packages for statistical genomics
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2009-08-12 17:07 |
14. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2012-10-16 20:41 |
15. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
16. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2016-02-18 15:57 |
17. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Operating System : Microsoft [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
18. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
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Registered: 2011-11-29 13:02 |
19. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Topic : Machine Learning [Filter]
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Registered: 2014-02-03 16:15 |
51 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
