R Development Page
Contributed R Packages
Below is a list of all packages provided by project Cureos.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
| cureos | Cureos=Conserved Upstream Regulatory Elements in Orthologous Sequences. Collection of functions to search sequences using scoring matrices (PWMs, PSSMs). | |||||||||
| This package implements several functions useful for analyse and use Count/Frequency or Scoring matrices (i.e. PWMs PSSMs) such as used to search for motifs in DNA or Protein sequences, e.g. transcription factor binding sites (TFBS). Its special focus is to search for for Conserved Upstream Regulatory Elements (TFBSs) in Orthologous Sequences. It also contains functions to visualize elements summarized in UCSC track format (see genome.ucsc.edu) on sequence. It can be used to visualize results of chip-on-chip experiments. | ||||||||||
| Version: 0.3 | Last change: 2012-02-22 17:43:31+01 | Rev.: 5 | ||||||||||
Download:
 (.tar.gz) |
 (.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("cureos", repos="http://R-Forge.R-project.org") | ||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
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