R Development Page

Contributed R Packages

Below is a list of all packages provided by project HTSanalyzeR.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

HTSanalyzeR	Network and gene set enrichment analyses for high throughput screens.
	This package does gene set over-representation of hits, gene set enrichment analysis and network analysis on data sets such as high-throughput RNAi screens. The over-representation analysis is done both by hypergeometric test and GSEA (Subramanian et al., PNAS 2005). The network analysis identifies enriched subnetworks based on algorithms from the BioNet package (Beisser et al., Bioinformatics 2010)
	Version: 2.1.0 | Last change: 2010-12-06 02:41:09+01 | Rev.: 57
	Download: (.tar.gz) | (.zip) | Build status: Current
	R install command: install.packages("HTSanalyzeR", repos="http://R-Forge.R-project.org")
	Logs:   Package build: Source package (Linux x86_64) Windows binary (x86_64/i386) Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

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