SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project Rigorous Analytics.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

dpmixsim

Dirichlet Process Mixture model simulation for clustering and image segmentation

  The package implements a Dirichlet Process Mixture (DPM) model for clustering and image segmentation. The DPM model is a Bayesian nonparametric methodology that relies on MCMC simulations for exploring mixture models with an unknown number of components. The code implements conjugate models with normal structure (conjugate normal-normal DP mixture model). The packages applications are oriented towards the classification of magnetic resonance images according to tissue type or region of interest.
  Version: 0.0-5 | Last change: 2010-11-22 22:32:19+01 | Rev.: 142
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get dpmixsim 0.0-8 from CRAN
  R install command: install.packages("dpmixsim", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oro.asl

Rigorous - Aterial Spin Labelling

  Medical imaging processing, visualization and statistical methods for arterial spin labelling (ASL) acquisitions, part of the Rigorous Analytics bundle.
  Version: 0.1.0 | Last change: 2011-02-04 12:57:55+01 | Rev.: 169
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("oro.asl", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oro.dicom

Rigorous - DICOM Input / Output

  Data input/output functions for data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.
  Version: 0.4.3 | Last change: 2015-01-17 17:01:05+01 | Rev.: 345
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get oro.dicom 0.5.0 from CRAN
  R install command: install.packages("oro.dicom", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oro.dti

Rigorous - Diffusion Tensor Imaging

  Medical imaging processing, visualization and statistical methods for diffusion tensor imaging (DTI) acquisitions, part of the Rigorous Analytics bundle.
  Version: 0.1.0 | Last change: 2010-11-25 16:17:42+01 | Rev.: 146
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("oro.dti", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oro.nifti

Rigorous - NIfTI+ANALYZE+AFNI Input / Output

  Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.
  Version: 0.4.3 | Last change: 2015-01-18 14:43:17+01 | Rev.: 346
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get oro.nifti 0.7.2 from CRAN
  R install command: install.packages("oro.nifti", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


oro.pet

Rigorous - Positron Emission Tomography

  Image analysis techniques for positron emission tomography (PET) that form part of the Rigorous Analytics bundle.
  Version: 0.2.4 | Last change: 2015-01-18 14:51:35+01 | Rev.: 347
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get oro.pet 0.2.3 from CRAN
  R install command: install.packages("oro.pet", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


qaqc

Quality Assurance and Quality Control Procedures for DICOM Data

  The application of quality assurance and quality control (QAQC) procedures to both header and image components of the Digital Imaging and Communications in Medicine (DICOM) standard.
  Version: 0.1.4 | Last change: 2011-12-08 13:05:09+01 | Rev.: 241
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("qaqc", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

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