R Development Page
Contributed R Packages
Below is a list of all packages provided by project FLR.
Important note for package
binaries: R-Forge provides these binaries only for
the most recent version of R, but not for older
versions. In order to successfully install the
packages provided on R-Forge, you have to switch
to the most recent version of R or, alternatively,
install from the package sources (.tar.gz).
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FLAdvice | Reference Points and Advice
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Calculates a range of biological reference points based upon yield per
recruit and stock recruit based equilibrium calculations. These include F based
reference points like F0.1, FMSY and biomass based reference points like BMSY. |
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Version: 1.0.1 |
Last change: 2013-04-09 16:21:51+02 |
Rev.: 1893 |
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Download:
 (.tar.gz) |
 (.zip) |
Build status: Current |
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R install command:
install.packages("FLAdvice", repos="http://R-Forge.R-project.org") |
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FLAssess | Generic classes and methods for stock assessment models
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A generic set of classes for stock assessment models
are provided here. Individual assessment packages should
extend the basic classes. |
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Version: 2.5.0 |
Last change: 2012-09-10 14:39:31+02 |
Rev.: 1724 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLAssess", repos="http://R-Forge.R-project.org") |
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FLBEIA | Bio-Economic Impact Assessment of Management strategies using FLR
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BEIA is a simulation model that describes a fishery system under a Management Strategy Estrategy framework.The objective of the model is to facilitate the Bio-Economic Impact Assessment of a great Variety of Management strategies. The model is multistock, multifleet and seasonal. The simulation is divided in 2 main parts, the Operating Model (OM) and the Management Procedure Model (MPM). At the same time the OM is divided in 3 componenets, the biological component, whcih simulates the stocks dynamics, the fleets component, that simulates de fleets dynamics and the covariables component, that simulates the dynamic of any variable that is not included in biological and fleets component. The MPM is also divided in 3 components, the observation model, which simulates the data collection, the assessment model, which uses the simulated data to produce an observed population, and the advice model which produces the advice based on the output of the assessment model. |
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Version: 1.3 |
Last change: 2013-07-04 13:17:10+02 |
Rev.: 1920 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLBEIA", repos="http://R-Forge.R-project.org") |
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FLBRP | Biological Reference Points
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Calculates a range of biological reference points based upon yield per
recruit and stock recruit based equilibrium calculations. These include F based
reference points like F0.1, FMSY and biomass based reference points like BMSY. |
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Version: 2.5.0 |
Last change: 2012-03-15 15:07:57+01 |
Rev.: 1586 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLBRP", repos="http://R-Forge.R-project.org") |
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FLBioDym | Biomass Dynamic Models
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Fits Fox, Pella Tomlinson, Schaeffer, Fletcher and Shepherd biomass dynamics models to catch & CPUE |
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Version: 0.1.2 |
Last change: 2013-03-19 00:14:13+01 |
Rev.: 1886 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLBioDym", repos="http://R-Forge.R-project.org") |
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FLBocadillo | Generic methods for FLR Interface to 3rd party stock assessment methods
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A generic set of methods for interfacing 3rd party stock assessment methids to FLR |
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Version: 2.00-1 |
Last change: 2013-05-06 17:19:40+02 |
Rev.: 1898 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLBocadillo", repos="http://R-Forge.R-project.org") |
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FLCore | Core package of FLR, fisheries modelling in R.
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FLCore contains the core classes and methods for FLR, a framework for fisheries modelling and management strategy simulation in R. Developed by a team of fisheries scientists in various countries. More information can be found at http://flr-project.org/, including a development mailing list. |
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Version: 2.5.0 |
Last change: 2013-04-25 18:02:31+02 |
Rev.: 1897 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLCore", repos="http://R-Forge.R-project.org") |
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FLEDA | Exploratory Data Analysis for FLR
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Develops several procedures to explore fisheries data |
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Version: 2.5 |
Last change: 2012-08-31 15:43:28+02 |
Rev.: 1715 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLEDA", repos="http://R-Forge.R-project.org") |
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FLExamples | Example datasets for FLR manuals and tutorials
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Contains a number of datasets to be used in different FLR tutorials, manuals and pkgs. |
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Version: 0.1 |
Last change: 2012-01-19 16:02:31+01 |
Rev.: 1472 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLExamples", repos="http://R-Forge.R-project.org") |
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FLRDynState | 2 spec Dynamic State Variable Model
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Package contains a 2 species Dynamic State Variable Model |
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Version: 2.5 |
Last change: 2011-10-03 10:13:23+02 |
Rev.: 1289 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLRDynState", repos="http://R-Forge.R-project.org") |
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FLSAM | FLSAM, an implementation of the State-space Assessment Model for FLR
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FLR wrapper to the SAM state-space assessment model |
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Version: 0.99-991 |
Last change: 2013-06-10 15:15:03+02 |
Rev.: 1919 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLSAM", repos="http://R-Forge.R-project.org") |
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FLXSA | eXtended Survivor Analysis for FLR
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Recreates stock numbers at age from commercial catch data |
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Version: 2.5 |
Last change: 2011-09-30 12:00:03+02 |
Rev.: 1283 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLXSA", repos="http://R-Forge.R-project.org") |
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FLash | Aaaaahhhhhhh
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Saviour of the universe |
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Version: 2.5.0 |
Last change: 2013-01-17 15:02:43+01 |
Rev.: 1815 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLash", repos="http://R-Forge.R-project.org") |
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FLsz | What the package does (short line)
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More about what it does (maybe more than one line) |
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Version: 1.0 |
Last change: 2012-12-07 16:37:35+01 |
Rev.: 1787 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("FLsz", repos="http://R-Forge.R-project.org") |
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SQLiteFL | Storing FLR objects in SQLite.
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SQLite for FLR |
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Version: 0.2 |
Last change: 2012-11-28 14:47:27+01 |
Rev.: 1781 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("SQLiteFL", repos="http://R-Forge.R-project.org") |
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aspic | What the package does (short line)
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ASPIC |
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Version: 2.0.1 |
Last change: 2013-04-18 07:04:34+02 |
Rev.: 1896 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Failed to build |
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R install command:
install.packages("aspic", repos="http://R-Forge.R-project.org") |
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biodyn | Biomass Dynamic Model
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implements a biomass dynamic model class |
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Version: 0.0.1 |
Last change: 2013-03-24 21:09:06+01 |
Rev.: 1891 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Failed to build |
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R install command:
install.packages("biodyn", repos="http://R-Forge.R-project.org") |
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cpue | Stock Assessment Tools for Catch per Unit Effort (CPUE).
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This package provides methods to work with CPUE data from a
variety of fish stock assessment programs. Stock assessment is conducted
using a variety of standalone executable programs, each with their own
input and output file formats. This package provides a set of common
methods for reading these data into R, plotting and summarising them. It
also provides methods for data exchange between programs, i.e. as well as
reading in data from a variety of file formats it also provides methods for
writing data in the same file formats. |
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Version: 0.1 |
Last change: 2013-02-25 14:41:22+01 |
Rev.: 1864 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("cpue", repos="http://R-Forge.R-project.org") |
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ggplotFL | Using ggplot2 in FLR
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Using ggplot2 for FLR. Provides (1) overloaded ggplot methods for various
FLR classes, and (2) ggplot-based versions of standard plots in various FLR pkgs. |
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Version: 0.1 |
Last change: 2013-03-08 13:34:15+01 |
Rev.: 1881 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("ggplotFL", repos="http://R-Forge.R-project.org") |
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kobe | Tools for providing advice for the Tuna Regional Fisheries Management Organisations
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The package reads in results from a variety of fish stock assessment packages and
summarise them in the Kobe Scientific advice format used within the tuna Regional Fisheries Management Organisations (tRFMOs)..
Advice summarises the probabilities of biomass being greater than and fishing mortality less than the levels that can support
maximum sustainable yield (MSY) for a range of management options. |
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Version: 1.2.2 |
Last change: 2013-03-20 16:11:40+01 |
Rev.: 1887 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | Stable Release: Get kobe 1.3.2 from CRAN |
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R install command:
install.packages("kobe", repos="http://R-Forge.R-project.org") |
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.
