R Development Page

Contributed R Packages

Below is a list of all packages provided by project Atlas and Analysis.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).



Atlas and Analysis of Systems-Biology-Led Pathways

  Pathway-level analysis is supported using a collection of curated pathways (A2). Taking as inputs user-defined list of genes or genomic regions, it outputs pathways regulated and details gene members involved as well. Transforming genomic regions into pathways is enabled by defining modulated genes based on conformation evidence, expression quantitative trait loci mapping, enhancer-promoter expression and genomic proximity. Together with its web-app, A2 aids in understanding molecular circuits such as resulted from differential studies at the gene and genomic region level.
  Version: 1.0.0 | Last change: 2018-04-03 15:45:54+02 | Rev.: 12
  Download: linux(.tar.gz) | windows(.zip) | Build status: Failed to build
  R install command: install.packages("A2", repos="")
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

Old Version: 1.0.0 | Last change: 2018-03-06 23:00:02
Old Version Download: linux(.tar.gz) | windows(.zip)


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