R Development Page
Contributed R Packages
Below is a list of all packages provided by project Cytangle.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
| Cytangle | Analyzing Single Cell Mass Cytometry Data | |||||||||
| Defines classes and methods to analyze how relationships between protein markers vary in single cell mass cytometry data. | ||||||||||
| Version: 0.3.0 | Last change: 2023-01-25 14:21:36+01 | Rev.: 35 | ||||||||||
Download:
 (.tar.gz) |
 (.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("Cytangle", repos="http://R-Forge.R-project.org") | ||||||||||
|
| EBGLIDE | Testing Significance of Topological Loops and Voids | |||||||||
| The method of topolgical data analysis uses persistent homology to discover intersting toplogical structurs (includig loops and voids) from "point cloud" data sets. One of the statistical challenges is to distinguish transient noise from long-lasting biologically meaningful structure. EBGLIDE provides tools to help solve this problem. | ||||||||||
| Version: 0.0.10 | Last change: 2025-04-09 20:12:35+02 | Rev.: 142 | ||||||||||
|
Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("EBGLIDE", repos="http://R-Forge.R-project.org") | ||||||||||
|
| RPointCloud | Visualizing Topological Loops and Voids | |||||||||
|
Visualizations to explain the results of a topological
data analysis. The goal of topological data analysis is to identify
persistent topological structures, such as loops (topological circles)
and voids (topological spheres), in data sets. The output of an
analysis using the TDA package is a Rips diagram (named after the
mathematician Eliyahu Rips). The goal of RPointCloud is to fill in
these holes in the data by providing tools to visualize the features
that help explain the structures found in the Rips diagram. See McGee
and colleagues (2024) | ||||||||||
| Version: 0.8.0 | Last change: 2024-08-19 19:23:47+02 | Rev.: 134 | ||||||||||
|
Download:
(.tar.gz) |
(.zip) |
Build status: Current | Stable Release: Get RPointCloud 0.8.0 from CRAN | ||||||||||
R install command:
install.packages("RPointCloud", repos="http://R-Forge.R-project.org") | ||||||||||
|
| WayFindR | Computing Graph Structures on WikiPathways | |||||||||
| Converts pathways from WikiPathways GPML format or KEGG KGML format into igraph objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition). | ||||||||||
| Version: 0.3.1 | Last change: 2025-04-08 21:12:05+02 | Rev.: 141 | ||||||||||
|
Download:
(.tar.gz) |
(.zip) |
Build status: Current | Stable Release: Get WayFindR 0.3.1 from CRAN | ||||||||||
R install command:
install.packages("WayFindR", repos="http://R-Forge.R-project.org") | ||||||||||
|
Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.
