SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project opm and opmdata.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

opm

Analysing Phenotype Microarray and Growth Curve Data

  Tools for analysing OmniLog(R) and MicroStation(TM) phenotype microarray (PM) data as produced by the devices distributed by BIOLOG Inc. as well as similar kinds of data such as growth curves. Major facilities are plotting data, accurately estimating curve parameters, comparing and discretising data, creating phylogenetic formats and reports for taxonomic journals, drawing the PM analysis results in biochemical pathway graphs optionally including genome annotations, running multiple comparisons of means, easy interaction with powerful feature-selection approaches, integrating metadata, using the YAML format for the storage of data and metadata, batch conversion of large numbers of files, and database I/O.
  Version: 1.3.77 | Last change: 2018-10-23 08:14:33+02 | Rev.: 848
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("opm", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


opmdata

OmniLog(R) Phenotype Microarray Example Data

  Tools for analysing OmniLog(R) Phenotype Microarray (PM) data as produced by the device distributed by BIOLOG Inc. and similar kinds of data such as growth curves are provided in the opm package. The opmdata package contains the entire example data set from Vaas et al. (2012), which has been removed from opm due to its size, as well as the data sets from Wittmann et al. (2013) and Montero-Calasanz et al. (2013).
  Version: 0.7.6 | Last change: 2015-10-08 17:51:28+02 | Rev.: 725
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("opmdata", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


opmextra

Additional Functions for Analysing OmniLog(R) Phenotype Microarray Data

  Tools for analysing OmniLog(R) Phenotype Microarray (PM) data as produced by the device distributed by BIOLOG Inc. and similar kinds of data such as growth curves are available in the opm package. The package opmextra contains functions for special purposes and thus have not been placed in opm.
  Version: 0.0.12 | Last change: 2017-10-18 15:58:51+02 | Rev.: 842
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("opmextra", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


pkgutils

Utilities for Creating R Packages

  Tools for creating R packages, particularly for checking the documentation produced by roxygen2 and for adding support for the documentation of S4 methods. Also included are some functions of use when coding a package and some of use in interactive R sessions. Finally, R syntax-highlighting patterns for some text editors are contained.
  Version: 0.7.74 | Last change: 2018-10-23 10:16:46+02 | Rev.: 850
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("pkgutils", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

If your package is not shown on this page or not building, then check the build system status report.

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