R Development Page
Contributed R Packages
Below is a list of all packages provided by project Tools for the analysis of genomic data.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
FIRMAGene | FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST | |||||||||
Tools for the analysis of differential splicing for microarray data | ||||||||||
Version: 0.9.8 | Last change: 2013-05-29 11:32:34+02 | Rev.: 166 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("FIRMAGene", repos="http://R-Forge.R-project.org") | ||||||||||
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RepitoolsExamples | Examples For Repitools User Guide | |||||||||
All the datasets that were used for the user manual examples. | ||||||||||
Version: 1.0.12 | Last change: 2010-04-14 12:27:33+02 | Rev.: 162 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Failed to build | ||||||||||
R install command:
install.packages("RepitoolsExamples", repos="http://R-Forge.R-project.org") | ||||||||||
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RepitoolsOld | Epigenomic tools | |||||||||
Tools that we made for looking at epigenomic data | ||||||||||
Version: 0.9.8 | Last change: 2010-03-11 22:58:01+01 | Rev.: 156 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("RepitoolsOld", repos="http://R-Forge.R-project.org") | ||||||||||
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gsmoothr | Smoothing tools | |||||||||
Tools rewritten in C for various smoothing tasks | ||||||||||
Version: 0.1.7 | Last change: 2014-03-03 08:55:52+01 | Rev.: 168 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | Stable Release: Get gsmoothr 0.1.7 from CRAN | ||||||||||
R install command:
install.packages("gsmoothr", repos="http://R-Forge.R-project.org") | ||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.