R Development Page
Contributed R Packages
Below is a list of all packages provided by project Thresher.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
Mercator | Clustering and Visualizing Distance Matrices | |||||||||||
Defines the classes used to explore, cluster and
visualize distance matrices, especially those arising from binary
data. See Abrams and colleagues, 2021, | ||||||||||||
Version: 1.1.4 | Last change: 2024-04-26 18:10:06+02 | Rev.: 285 | ||||||||||||
Download: (.tar.gz) | (.zip) | Build status: Building | Stable Release: Get Mercator 1.1.4 from CRAN | ||||||||||||
R install command:
install.packages("Mercator", repos="http://R-Forge.R-project.org") | ||||||||||||
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PCDimension | Finding the Number of Significant Principal Components | |||||||||
Implements methods to automate the Auer-Gervini graphical
Bayesian approach for determining the number of significant
principal components. Automation uses clustering, change points, or
simple statistical models to distinguish "long" from "short" steps
in a graph showing the posterior number of components as a function
of a prior parameter. See | ||||||||||
Version: 1.1.13 | Last change: 2022-06-30 18:48:54+02 | Rev.: 266 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | Stable Release: Get PCDimension 1.1.13 from CRAN | ||||||||||
R install command:
install.packages("PCDimension", repos="http://R-Forge.R-project.org") | ||||||||||
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RCytoGPS | Using Cytogenetics Data in R | |||||||||
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then import the results into R for further analysis and graphing. | ||||||||||
Version: 1.2.5 | Last change: 2023-11-27 17:27:56+01 | Rev.: 281 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | Stable Release: Get RCytoGPS 1.2.5 from CRAN | ||||||||||
R install command:
install.packages("RCytoGPS", repos="http://R-Forge.R-project.org") | ||||||||||
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SillyPutty | Silly Putty Clustering | |||||||||
Implements a simple, novel clustering algorithm based on
optimizing the silhouette width. See | ||||||||||
Version: 0.4.1 | Last change: 2024-02-07 15:47:04+01 | Rev.: 284 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | Stable Release: Get SillyPutty 0.4.1 from CRAN | ||||||||||
R install command:
install.packages("SillyPutty", repos="http://R-Forge.R-project.org") | ||||||||||
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Thresher | Threshing and Reaping for Principal Components | |||||||||||
Defines the classes used to identify
outliers (threshing) and compute the number of significant principal
components and number of clusters (reaping) in a joint application
of PCA and hierarchical clustering. See Wang et al., 2018,
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Version: 1.1.4 | Last change: 2024-04-26 18:10:06+02 | Rev.: 285 | ||||||||||||
Download: (.tar.gz) | (.zip) | Build status: Building | Stable Release: Get Thresher 1.1.4 from CRAN | ||||||||||||
R install command:
install.packages("Thresher", repos="http://R-Forge.R-project.org") | ||||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.