SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project CALIBER health records research toolkit.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

CALIBERcodelists

Generate ICD10, Read and OPCS codelists

  Facilitates the generation, documentation and comparision of codelists for identifying diagnoses, procedures, investigations and other events recorded for patients in CALIBER electronic health record data. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
  Version: 0.2-10 | Last change: 2017-11-29 15:07:01+01 | Rev.: 58
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("CALIBERcodelists", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


CALIBERdatamanage

Data Management Tools for CALIBER Datasets

  Data management tools for CALIBER datasets of electronic health records. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
  Version: 0.1-14 | Last change: 2018-01-31 18:50:52+01 | Rev.: 59
  Download: linux(.tar.gz) | windows(.zip) | Build status: Failed to build
  R install command: install.packages("CALIBERdatamanage", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


Old Version: 0.1-13 | Last change: 2016-08-25 09:31:27
Old Version Download: linux(.tar.gz) | windows(.zip)

CALIBERdrugdose

Extract Drug Dose From Unstructured Dosage Text

  Functions to extract drug dose from text in general practice records, such as in the CALIBER electronic health record database. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
  Version: 0.1-2 | Last change: 2017-03-06 23:31:35+01 | Rev.: 57
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("CALIBERdrugdose", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


CALIBERfma

R interface to the Freetext Matching Algorithm

  The Freetext Matching Algorithm is a natural language processing system for clinical text. This R package facilitates the use of the program in R for Linux systems with wine. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
  Version: 0.1-0 | Last change: 2014-08-22 17:03:52+02 | Rev.: 42
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("CALIBERfma", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


CALIBERrfimpute

Multiple Imputation Using MICE and Random Forest

  Functions to impute using Random Forest under Full Conditional Specifications (Multivariate Imputation by Chained Equations). The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
  Version: 1.0-1 | Last change: 2018-06-12 00:45:48+02 | Rev.: 61
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get CALIBERrfimpute 1.0-1 from CRAN
  R install command: install.packages("CALIBERrfimpute", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

If your package is not shown on this page or not building, then check the build system status report.

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