SCM

[#5739] Partitioned analysis

Date:
2014-05-30 13:33
Priority:
3
State:
Open
Submitted by:
Brian O'Meara (bcomeara)
Assigned to:
Nobody (None)
Product:
None
Operating System:
None
Component:
None
Summary:
Partitioned analysis

Detailed description
For comparative phylogeography (multiple species) or mtDNA vs nucDNA (different pop size), allow different sims for each partition (with appropriate scaling of pop size in the mtDNA case), to get grid of lnL (from AIC) for each model for each partition. Then compare a model where all the partitions have the same model, perhaps with same parameters (after scaling) with a free model.

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