SCM

[#5736] SNPs

Date:
2014-05-29 12:42
Priority:
3
State:
Open
Submitted by:
Brian O'Meara (bcomeara)
Assigned to:
Nobody (None)
Product:
None
Operating System:
None
Component:
None
Summary:
SNPs

Detailed description
Deal efficiently with data with many single snps. I.e., rather than doing multiple resolutions, just look for the single edge on the observed tree from each snp in the simulated trees, correct for lack of resolution without having to explicitly try different resolved gene trees.

Comments:

Message  ↓
Date: 2014-05-30 13:35
Sender: Brian O'Meara

Now have way to do it (doSNPs=TRUE in GridSearch) but requires a gene tree for each snp. Modify it to automatically create this from nexus DNA file.

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Changes

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