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[#4854] When using mmscore, there is one (nan) column missing in the output for low-frequency SNPs

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Date:
2013-08-28 12:14
Priority:
3
State:
Closed
Submitted by:
Lennart Karssen (lckarssen)
Assigned to:
Lennart Karssen (lckarssen)
Resolution:
Fixed
Operating System:
All
Severity:
normal
Hardware:
All
Version:
PA v0.4.0
Component:
ProbABEL
URL:
 
Summary:
When using mmscore, there is one (nan) column missing in the output for low-frequency SNPs

Detailed description
For low frequency SNPs ProbABEL prints nan for beta and SE_beta.
However, when using palinear with --mmscore the nan (probably of the chi^2) is missing, so in the output file not every line has the same number of columns. This makes it difficult to read the output file into R.

Reported by Sven vd Lee.

Followup

Message
Date: 2013-08-29 21:25
Sender: Lennart Karssen

Fixed in SVN r.1322.

Attached Files:

Changes:

Field Old Value Date By
ResolutionAccepted As Bug2013-08-29 21:25lckarssen
close_dateNone2013-08-29 21:25lckarssen
status_idOpen2013-08-29 21:25lckarssen
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