| Detailed description |
Reported by Marcin Kierczak:
It seems that calling convert.snp.ped on OsX, GenABEL 1.6.6 rises the following errors:
1. "Error: segfault from C stack overflow" or even "R quit unexpectedly". (32 bit version)
R 64 either
1. *** caught segfault ***
Traceback:
1: .C("convert_snp_merlin", as.character(pedfile), as.character(mapfile), as.character(outfile), as.integer(intstrand), as.integer(bcast), as.character(alcodes), as.integer(length(alcodes)), as.integer(intfmt), as.integer(traits), as.integer(mapHasHeaderLine), PACKAGE = "GenABEL")
2: convert.snp.ped("Sw_ej_opheno.ped", "Sw_ej_opheno.map", "Sw.raw")
or
2. invalid permissions and than segfault
When I modified permissions to 777, still segfault.
When downgraded to 1.6.5 - everything went smooth!
Marcin |
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