SCM

[#150] NCL tests fail on Mac OSX R 2.7.0

Date:
2008-06-03 06:41
Priority:
3
State:
Closed
Submitted by:
Peter Cowan (pdc)
Assigned to:
Ben Bolker (bbolker)
Operating System:
None
Severity:
None
Resolution:
Fixed
Component:
None
Version:
None
URL:
Summary:
NCL tests fail on Mac OSX R 2.7.0

Detailed description
R CMD check fails at the tests stage with the error:

checking tests ...
Running 'misctests.R'
Running 'nexusdata.R'
make[1]: *** [nexusdata.Rout] Error 1
make: *** [all] Error 2
ERROR
Running the tests in 'tests/nexusdata.R' failed.
Last 13 lines of output:
Reading CHARACTERS block...
Skipping unknown block (CHARACTERS2)
Reading TREES block...
Reading ASSUMPTIONS block...
Skipping unknown block (MESQUITECHARMODELS)
Skipping unknown block (MESQUITE)
Skipping unknown block (brownie)
Error in check_data(res, ...) :
Tip data names are a subset of tree tip labels
(missing data names: [&R],,,,,,,,,,)
(extra data names: Myrmecocystuscreightoni,Myrmecocystusdepilis,Myrmecocystuskennedyi,Myrmecocystusmendax,Myrmecocystusnavajo,Myrmecocystusnequazcatl,Myrmecocystusplacodops,Myrmecocystustenuinodis,Myrmecocystustestaceus,Myrmecocystuswheeleri,Myrmecocystusyuma)
Calls: NexusToPhylo4D -> phylo4d -> phylo4d -> .local -> check_data
Execution halted

Comments:

No Comments Have Been Posted

Attached Files:

Changes

Field Old Value Date By
status_idOpen2008-12-03 20:45bcomeara
assigned_tobcomeara2008-12-03 20:45bcomeara
close_date2008-12-03 20:452008-12-03 20:45bcomeara
ResolutionNone2008-12-03 20:45bcomeara
assigned_tonone2008-08-04 12:13bcomeara
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