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54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Chemoinformatics [Filter]
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Activity Percentile: 64.29
Registered: 2011-05-13 20:48 |
1. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
2. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
3. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Registered: 2013-01-17 23:06 |
4. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-28 19:28 |
5. CRImage - CRImage is a package to process and analyze biological images. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-27 11:26 |
6. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition. |
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : MacOS [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
7. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
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Registered: 2012-11-27 16:58 |
8. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2008-01-16 22:15 |
9. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- Operating System : POSIX : Linux [Filter]
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- Topic : Database : R Interfaces [Filter]
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Activity Percentile: 0.00
Registered: 2012-08-22 01:29 |
10. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2012-11-27 16:51 |
11. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS. |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2009-10-20 01:21 |
12. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge. |
- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Programming Language : R [Filter]
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- Topic : Datasets [Filter]
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Activity Percentile: 0.00
Registered: 2010-02-09 15:03 |
13. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
- Programming Language : C/C\+\+ [Filter]
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- Topic : Database : R Interfaces [Filter]
- Topic : Genetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
14. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : Artistic License [Filter]
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Activity Percentile: 0.00
Registered: 2010-09-03 21:34 |
15. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Topic : Regression Models [Filter]
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Activity Percentile: 0.00
Registered: 2009-08-22 09:52 |
16. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Natural Language : Russian [Filter]
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- Programming Language : Java [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
17. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Activity Percentile: 0.00
Registered: 2015-09-02 17:28 |
18. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/ |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : No Input/Output (Daemon) [Filter]
- Environment : Web Environment [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- License : Other/Proprietary License [Filter]
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Activity Percentile: 0.00
Registered: 2009-05-19 20:01 |
19. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer. |
- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-08 10:31 |
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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