0. Eagle for Genome-Wide Association Mappin- The Eagle package is an implementation of multiple-locus association mapping on a genome-wide scale. It can handle inbred or outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer.
1. ROI - R Optimization Infrastructure- The project ROI offers an infrastructure package for optimization. Its aim is to facilitate the usage of different mixed integer programming (MIP) solvers by providing a single interface.
4. spsextante - R to Sextante interface- Provides a suite of geospatial analysis tools by connecting R with the Sextante geograrphical information system (www.sextantegis.com), similar to spgrass6 and RSAGA.