0. related - Genetic relatedness in R- An R package that allows users to estimate pairwise relatedness of individuals based on codominant molecular markers, and also has simulation functions for comparing the performance of different estimators and for testing the resolution of a data set.
Development Status : 5 - Production/Stable [Filter]
3. Individual-based metapopulation model- This package provides functions to run an individual-based metapopulation model, which includes genetic dynamics of diploid individuals, and flexibly defined life-histories.
10. Evolution simulation and classification- After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.