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60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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40. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : BSD License [Filter]
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Registered: 2011-02-02 00:51 |
41. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2008-07-23 21:21 |
42. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution. |
- Development Status : 1 - Planning [Filter]
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Registered: 2007-12-05 06:24 |
43. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2013-01-17 23:06 |
44. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Registered: 2010-01-07 14:13 |
45. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2012-11-27 16:51 |
46. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-09-26 05:04 |
47. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-04-21 23:06 |
48. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-08-05 14:30 |
49. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2016-04-01 13:46 |
50. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals. |
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Registered: 2012-11-27 16:58 |
51. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition. |
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
52. CRImage - CRImage is a package to process and analyze biological images. |
- Development Status : 4 - Beta [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2010-06-27 11:26 |
53. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees. |
- Development Status : 4 - Beta [Filter]
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Registered: 2008-11-07 19:39 |
54. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output |
- Development Status : 4 - Beta [Filter]
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Registered: 2010-06-28 19:28 |
55. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data. |
- Development Status : 4 - Beta [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Registered: 2015-09-02 17:28 |
56. High-throughput Screens Analyzer - This project develops functional analysis methods, including gene set enrichment analysis, network analysis, etc, under a unified framework for high-throughput screening data. |
- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-06-29 09:33 |
57. OrgMassSpecR: Organic Mass Spectrometry - Organic/biological mass spectrometry data analysis. The development version of OrgMassSpecR is on GitHub (https://github.com/OrgMassSpec) and the stable version is on CRAN (https://cran.r-project.org/). The R-Forge repository is an archive. |
- Development Status : 4 - Beta [Filter]
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Registered: 2009-04-28 20:04 |
58. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
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Registered: 2013-04-11 08:27 |
59. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Registered: 2009-12-15 12:39 |
60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<3>