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Programming Language :: R [Remove This Filter]
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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. | |
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Activity Percentile: 0.00 Registered: 2010-09-06 17:05 |
1. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. | |
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Activity Percentile: 0.00 Registered: 2013-07-05 08:44 |
2. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. | |
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Activity Percentile: 0.00 Registered: 2009-10-07 19:54 |
3. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study. | |
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Activity Percentile: 0.00 Registered: 2011-04-19 11:00 |
4. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads. | |
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Registered: 2010-05-14 17:13 |
5. cvrcalc - A Cardiovascular Risk's Calculator by Scores | |
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Activity Percentile: 0.00 Registered: 2013-08-02 12:18 |
6. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. | |
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Activity Percentile: 0.00 Registered: 2013-11-21 21:46 |
7. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures | |
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Activity Percentile: 0.00 Registered: 2009-04-17 15:10 |
8. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n. | |
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Activity Percentile: 0.00 Registered: 2010-06-25 04:17 |
9. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure. | |
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Activity Percentile: 0.00 Registered: 2013-12-19 15:12 |
10. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package. | |
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Activity Percentile: 0.00 Registered: 2009-02-18 10:01 |
11. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ | |
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Activity Percentile: 0.00 Registered: 2016-10-08 19:20 |
12. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. | |
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Activity Percentile: 0.00 Registered: 2011-03-07 18:54 |
13. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values. | |
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Activity Percentile: 0.00 Registered: 2014-02-14 10:16 |
14. modEvA - modEvA is an R package for species distribution model evaluation and analysis. | |
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Activity Percentile: 0.00 Registered: 2014-04-04 11:51 |
15. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function. | |
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Activity Percentile: 0.00 Registered: 2017-08-30 21:22 |
16. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven. | |
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Activity Percentile: 0.00 Registered: 2011-11-29 13:02 |
17. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details. | |
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Activity Percentile: 0.00 Registered: 2010-04-23 07:05 |
18. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator. | |
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Activity Percentile: 0.00 Registered: 2009-07-30 17:27 |
19. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation. | |
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Activity Percentile: 0.00 Registered: 2010-10-26 14:24 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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