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56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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20. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject |
- Development Status : 4 - Beta [Filter]
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Registered: 2010-10-09 02:03 |
21. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation. |
- Development Status : 4 - Beta [Filter]
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Registered: 2010-10-26 14:24 |
22. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details. |
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Registered: 2010-04-23 07:05 |
23. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. |
- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2011-03-07 18:54 |
24. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-09-14 03:27 |
25. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : Microsoft : Windows [Filter]
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Registered: 2007-12-03 15:58 |
26. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator. |
- Development Status : 4 - Beta [Filter]
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- Natural Language : French [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
27. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
- Development Status : 4 - Beta [Filter]
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Registered: 2009-11-30 09:36 |
28. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-10-11 08:51 |
29. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-10-07 17:59 |
30. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data |
- Development Status : 4 - Beta [Filter]
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- Programming Language : Python [Filter]
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Registered: 2017-02-15 20:58 |
31. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978). |
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Registered: 2015-07-04 09:37 |
32. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
33. The FEST package - Identification of Family Relations using linked markers. |
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : Perl [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2010-04-13 13:05 |
34. plsgenomics: PLS analyses for genomics - This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIP-chip analysis. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Multivariate Statistics : Projection Methods [Filter]
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Registered: 2014-10-30 14:27 |
35. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class. |
- Development Status : 1 - Planning [Filter]
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Registered: 2008-07-24 04:32 |
36. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
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Registered: 2011-06-10 12:24 |
37. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press. |
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Registered: 2011-02-18 14:08 |
38. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
- Development Status : 4 - Beta [Filter]
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- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
39. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Bioinformatics : Mathematics [Filter]
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Registered: 2010-09-06 17:05 |
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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