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54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Database [Filter]
Topic : Software Development [Filter]

Activity Percentile: 75.51
Activity Ranking: 13.00
Registered: 2016-04-01 13:46

1. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry, with functions for equilibrium activity diagrams and chemical affinities of reactions, supported by an extensive thermodynamic database and group additivity for proteins.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering) Topic : Chemoinformatics [Filter]	Activity Percentile: 42.86 Activity Ranking: 29.00 Registered: 2011-05-13 20:48

2. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Development Status : 3 - Alpha [Filter] Development Status : 4 - Beta [Filter] Intended Audience : Developers [Filter] Intended Audience : End Users/Desktop [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering) Topic : Genetics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-10-20 01:21

3. CRImage - CRImage is a package to process and analyze biological images.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering) Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-06-27 11:26

4. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering) Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-06-28 19:28

5. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : German [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Machine Learning : Random Forests [Filter]
Topic : Multivariate Statistics : Missing Data [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2011-05-18 08:28

6. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Programming Language : Tcl [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2009-11-20 09:49

7. RHRV - Package for carring out heart rate variability studies of ECG records

Development Status : 6 - Mature [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
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Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)

Activity Percentile: 0.00
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Registered: 2010-10-14 10:22

8. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.

Development Status : 3 - Alpha [Filter]
Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : BSD License [Filter]
Natural Language : English [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2010-01-18 10:18

9. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : POSIX : Linux [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering) Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2014-02-05 10:27

10. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2014-11-28 09:55

11. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering)	Registered: 2012-11-27 16:51

12. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
Natural Language : English [Filter]
Natural Language : German [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2010-02-24 09:24

13. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.

Development Status : 3 - Alpha [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : Java [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Genetics : Phylogenetics [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2008-07-17 03:57

14. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.

Development Status : 1 - Planning [Filter]
Environment : Other Environment [Filter]
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
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Intended Audience : Other Audience [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Machine Learning [Filter]
Topic : Multivariate Statistics : Latent Variable Approaches [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2010-06-14 20:56

15. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Java [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Genetics [Filter]
Topic : Social Sciences [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2011-08-19 15:59

16. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter] Natural Language : English [Filter] Operating System : Microsoft : Windows : Windows Vista [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics (Now Filtering) Topic : Datasets [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-02-09 15:03

17. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples. Currently hosted packages: csSAM and CellMix packages.

Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Genetics [Filter]
Topic : Software Development [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2013-04-11 08:27

18. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.

Development Status : 2 - Pre-Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2010-01-08 10:31

19. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated)

Development Status : 3 - Alpha [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics (Now Filtering)

Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2018-01-19 16:21

54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1> <2> <3>