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420. RWinEdt - RWinEdt is a package that implements a quite ugly interface from WinEdt to R. Note that the License GPL is specific to the R package RWinEdt, not to the editor WinEdt itself (which is not shipped with the package).

Development Status : 5 - Production/Stable [Filter]
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Registered: 2007-09-14 14:22

421. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

Development Status : 4 - Beta [Filter]
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Topic : High Performance Computing [Filter]

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Registered: 2013-05-29 18:34

422. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics [Filter]

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Registered: 2011-10-11 08:51

423. Entropy-based LISA - Provides the functions to quantify local spatial association using a novel entropy-based method, named Entropy-based Local Indicator of Spatial Association (ELSA).

Development Status : 3 - Alpha [Filter]
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Topic : Spatial Data & Statistics : Geostatistics [Filter]

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Registered: 2013-09-23 01:30

424. cardidates - Peaks in Environm. Series - cardidates: Methods for Peak Identification in Environmental Time Series

Development Status : 4 - Beta [Filter]
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Topic : Time Series [Filter]

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Registered: 2008-12-12 11:07

425. Regression with Functional Data - Methodology for regression with functional data, including a variety of approaches to (i) regressing scalar responses on functional predictors and (ii) regression with functional responses.
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop [Filter] Natural Language : English (Now Filtering) Programming Language : R [Filter] Topic : Regression Models [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2012-08-05 16:54

426. Use R for Fun - This is a collection of R games and other funny stuff, such as the classical Mine sweeper and sliding puzzles. This repository has been moved to http://github.com/yihui/fun
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Programming Language : R [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-04-04 08:57

427. Bertin matrices - Matrix manipulation and display, following the proposals of J. Bertin. Bertin’s permutation matrices give simple and effective tools for the graphical analysis of data matrices or tables.

Development Status : 3 - Alpha [Filter]
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Topic : Graphics : Applications [Filter]
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Registered: 2007-11-29 20:50

428. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal. Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]

Registered: 2010-05-14 17:13

429. Sea Level Trends - The sealevel package provides utility functions to read data from sea level data archives such as PSMSL, CSIRO, Colorado.edu and Soest. See http://publicwiki.deltares.nl/label/sealevel for examples.

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Activity Percentile: 0.00
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Registered: 2012-11-26 19:44

430. seriation - Infrastructure for seriation - Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Seriation is now maintained on githup at http://github.com/mhahsler/seriation

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Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
Topic : Optimization : Mathematical Programming : Global Optimization [Filter]

Registered: 2008-02-01 22:32

431. Plotrix development - Plotrix development and maintenance

Development Status : 5 - Production/Stable [Filter]
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Topic : Graphics : Colors [Filter]
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Topic : Graphics : Plotting [Filter]

Activity Percentile: 0.00
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Registered: 2012-05-03 10:56

432. Modelling Peaks Over Threshold - The project consists in developing functions for peaks over threshold modeling. Most of results come from the extreme value theory (EVT). The EVT is currently extensively used, mostly in environmental sciences and finance.

Development Status : 5 - Production/Stable [Filter]
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Topic : Finance : Risk Management : Value at Risk [Filter]
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Activity Percentile: 0.00
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Registered: 2007-09-21 14:29

433. Multiple comparison test visualization - The aim of this R package is to visualize results from the multiple (i.e. pairwise) comparison tests. The groups being compared are visualized as nodes of a Hasse diagram. It enables very clear and vivid depiction of large set of groups being compared.
Development Status : 4 - Beta [Filter] Environment : Other Environment [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Graphics : Plotting [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2012-10-24 12:00

434. Bayes factors - R functions for the computation of Bayes factors in common psychological experimental designs
Development Status : 4 - Beta [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bayesian Statistics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-09-29 14:02

435. Recommender Lab - development of recommenderlab was migrated to github (mhahsler/recommenderlab)
Development Status : 3 - Alpha [Filter] Intended Audience : Developers [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Programming Language : R [Filter] Topic : Machine Learning [Filter]	Registered: 2009-04-11 15:07

436. trip -- animal tracking data - The development of trip package is now hosted on GitHub, https://github.com/mdsumner/trip MDSumner 2013-07-04 Location estimation, track and spatial analysis for animal tag data.

Development Status : 4 - Beta [Filter]
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Topic : Spatial Data & Statistics : Classes for Spatial Data [Filter]
Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]

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Registered: 2010-06-24 02:07

437. GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.

Development Status : 4 - Beta [Filter]
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Registered: 2011-10-07 17:59

438. OriGen - This package implements methods for spatial ancestry described in the paper "Fast Spatial Ancestry via Flexible Allele Frequency Surfaces" published in Bioinformatics 2014.
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Programming Language : Fortran [Filter] Programming Language : R [Filter] Topic : Genetics : Population Genetics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2014-08-26 19:51

439. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data Unification of different output formats Quality Control to find problematic reactions Normalisation of data
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics [Filter] Topic : Bioinformatics : Visualization [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2008-10-09 17:22