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Topic :: Bioinformatics [Remove This Filter]
53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 86.84
Activity Ranking: 6.00
Registered: 2016-04-21 23:06 |
1. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 76.32
Activity Ranking: 10.00
Registered: 2016-04-01 13:46 |
2. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 36.84
Activity Ranking: 25.00
Registered: 2014-01-22 14:22 |
3. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry, with functions for equilibrium activity diagrams and chemical affinities of reactions, supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Chemoinformatics [Filter]
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Activity Percentile: 31.58
Activity Ranking: 27.00
Registered: 2011-05-13 20:48 |
4. RHRV - Package for carring out heart rate variability studies of ECG records
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- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 10.53
Activity Ranking: 35.00
Registered: 2010-10-14 10:22 |
5. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : German [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
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Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2011-05-18 08:28 |
6. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
7. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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Activity Percentile: 0.00
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Registered: 2013-05-29 18:34 |
8. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
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- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
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Registered: 2009-10-20 01:21 |
9. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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Activity Percentile: 0.00
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Registered: 2011-09-26 05:04 |
10. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2010-01-07 14:13 |
11. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Activity Percentile: 0.00
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Registered: 2015-09-02 17:28 |
12. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
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Registered: 2014-10-23 15:21 |
13. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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Activity Percentile: 0.00
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Registered: 2012-08-22 01:29 |
14. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Activity Percentile: 0.00
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Registered: 2014-05-31 04:36 |
15. CRImage - CRImage is a package to process and analyze biological images.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00
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Registered: 2010-06-27 11:26 |
16. OrgMassSpecR: Organic Mass Spectrometry - Organic/biological mass spectrometry data analysis. The development version of OrgMassSpecR is on GitHub (https://github.com/OrgMassSpec) and the stable version is on CRAN (https://cran.r-project.org/). The R-Forge repository is an archive.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : BSD License [Filter]
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Activity Percentile: 0.00
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Registered: 2009-04-28 20:04 |
17. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
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Registered: 2014-02-03 16:21 |
18. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2010-05-14 17:19 |
19. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
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Activity Percentile: 0.00
Activity Ranking: 0.00
Registered: 2010-05-06 10:59 |
53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1> <2> <3>
