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50 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2008-08-21 11:49 |
1. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2012-07-12 22:01 |
2. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-09-06 17:05 |
3. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class. |
- Development Status : 1 - Planning [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- Intended Audience : System Administrators [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2008-07-24 04:32 |
4. cvrcalc - A Cardiovascular Risk's Calculator by Scores |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2013-08-02 12:18 |
5. HaarSeg - HaarSeg: Tiling Microarray Segmentation. Based on: Erez Ben-Yaacov and Yonina C. Eldar, "A Fast and Flexible Method for the Segmentation of aCGH Data", Bioinformatics, 2008. See www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-06-05 00:29 |
6. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-02-18 10:01 |
7. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. |
- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Regression Models [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2013-07-05 08:44 |
8. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Environmetrics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2016-10-08 19:20 |
9. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : High Performance Computing : Parallel Computing [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-11-20 16:56 |
10. GenABEL - A suite of packages for statistical genomics |
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2009-08-12 17:07 |
11. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2012-10-16 20:41 |
12. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : German [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
- Topic : Spatial Data & Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2017-08-30 21:22 |
13. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-07-30 17:27 |
14. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2012-06-13 23:35 |
15. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2016-02-18 15:57 |
16. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2014-02-03 16:37 |
17. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : MacOS [Filter]
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- Programming Language : Perl [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2013-11-21 21:46 |
18. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2007-12-03 15:58 |
19. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- Operating System : OS Independent [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Multiple Testing [Filter]
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-03-21 02:01 |
50 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1> <2> <3>