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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor. |
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Registered: 2010-04-01 17:54 |
1. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2010-03-21 02:01 |
2. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. |
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Registered: 2013-07-05 08:44 |
3. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach. |
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Registered: 2013-07-26 14:26 |
4. cvrcalc - A Cardiovascular Risk's Calculator by Scores |
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Registered: 2013-08-02 12:18 |
5. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
- Development Status : 4 - Beta [Filter]
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Registered: 2013-11-21 21:46 |
6. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface. |
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Registered: 2013-08-29 17:48 |
7. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model. |
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Registered: 2014-02-03 16:37 |
8. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes. |
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Registered: 2014-02-03 16:15 |
9. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads. |
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Registered: 2010-05-14 17:13 |
10. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model. |
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Registered: 2011-12-05 20:42 |
11. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-11-29 13:02 |
12. modEvA - modEvA is an R package for species distribution model evaluation and analysis. |
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Registered: 2014-04-04 11:51 |
13. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures |
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Registered: 2009-04-17 15:10 |
14. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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Registered: 2010-03-05 10:51 |
15. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject |
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Registered: 2010-10-09 02:03 |
16. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation. |
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Registered: 2010-10-26 14:24 |
17. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details. |
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Registered: 2010-04-23 07:05 |
18. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. |
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Registered: 2011-03-07 18:54 |
19. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
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Registered: 2011-09-14 03:27 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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