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44 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
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- Development Status : 3 - Alpha [Filter]
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
1. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
2. plsgenomics: PLS analyses for genomics - This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIP-chip analysis.
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- Development Status : 5 - Production/Stable [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : French [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Projection Methods [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2014-10-30 14:27 |
3. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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Registered: 2011-06-10 12:24 |
4. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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- Programming Language : C/C\+\+ [Filter]
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Registered: 2017-08-30 21:22 |
5. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-10-26 14:24 |
6. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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Registered: 2010-10-09 02:03 |
7. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
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Registered: 2012-07-12 22:01 |
8. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
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Registered: 2014-02-14 10:16 |
9. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.
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- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
- Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]
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Registered: 2010-06-25 04:17 |
10. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.
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- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
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Registered: 2010-04-01 17:54 |
11. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2012-06-13 23:35 |
12. cvrcalc - A Cardiovascular Risk's Calculator by Scores
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- Topic : Bioinformatics : Medical Science [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-08-02 12:18 |
13. HaarSeg - HaarSeg: Tiling Microarray Segmentation. Based on: Erez Ben-Yaacov and Yonina C. Eldar, "A Fast and Flexible Method for the Segmentation of aCGH Data", Bioinformatics, 2008. See www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm
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Registered: 2009-06-05 00:29 |
14. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2011-12-05 20:42 |
15. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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- Programming Language : Fortran [Filter]
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Registered: 2015-07-04 09:37 |
16. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.
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Registered: 2009-02-18 10:01 |
17. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.
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Registered: 2012-07-03 03:50 |
18. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2013-07-05 08:44 |
19. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2008-10-09 17:22 |
44 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1> <2> <3>
