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42 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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20. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. |
- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2011-03-07 18:54 |
21. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2011-04-19 11:00 |
22. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : R [Filter]
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Registered: 2011-06-10 12:24 |
23. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
24. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Genetics [Filter]
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Registered: 2011-09-14 03:27 |
25. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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Registered: 2010-03-05 10:51 |
26. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven. |
- Development Status : 4 - Beta [Filter]
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- Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
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Registered: 2011-11-29 13:02 |
27. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2011-12-05 20:42 |
28. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model. |
- Development Status : 4 - Beta [Filter]
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Registered: 2012-07-03 03:50 |
29. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
- Development Status : 4 - Beta [Filter]
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Registered: 2012-07-12 22:01 |
30. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2009-11-20 16:56 |
31. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions. |
- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Multivariate Distributions [Filter]
- Topic : Multivariate Statistics : Unsupervised Classification [Filter]
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Registered: 2011-05-10 07:45 |
32. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2012-06-13 23:35 |
33. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Regression Models [Filter]
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Registered: 2013-07-05 08:44 |
34. cvrcalc - A Cardiovascular Risk's Calculator by Scores |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Win32 (MS Windows) [Filter]
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Registered: 2013-08-02 12:18 |
35. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
- Development Status : 4 - Beta [Filter]
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- Programming Language : Perl [Filter]
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Registered: 2013-11-21 21:46 |
36. modEvA - modEvA is an R package for species distribution model evaluation and analysis. |
- Development Status : 4 - Beta [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-04-04 11:51 |
37. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978). |
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- Programming Language : Fortran [Filter]
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Registered: 2015-07-04 09:37 |
38. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2016-02-18 15:57 |
39. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-10-08 19:20 |
42 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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