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36 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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20. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2010-03-21 02:01 |
21. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor. |
- Development Status : 4 - Beta [Filter]
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Registered: 2010-04-01 17:54 |
22. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg> |
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Registered: 2009-06-05 00:29 |
23. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978). |
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Registered: 2015-07-04 09:37 |
24. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2010-05-14 17:13 |
25. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class. |
- Development Status : 1 - Planning [Filter]
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Registered: 2008-07-24 04:32 |
26. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details. |
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Registered: 2010-04-23 07:05 |
27. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
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Registered: 2009-10-07 19:54 |
28. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator. |
- Development Status : 4 - Beta [Filter]
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Registered: 2009-07-30 17:27 |
29. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. |
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Registered: 2011-10-11 08:51 |
30. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-10-08 19:20 |
31. GenABEL - A suite of packages for statistical genomics |
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2009-08-12 17:07 |
32. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-02-18 10:01 |
33. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. |
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Registered: 2011-10-07 17:59 |
34. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference |
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Registered: 2007-12-03 15:58 |
35. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
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Registered: 2011-09-14 03:27 |
36 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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