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47 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Development Status : 3 - Alpha [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Environmetrics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2016-10-08 19:20

1. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Graphical Models [Filter]
Topic : Time Series [Filter]

Activity Percentile: 0.00
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Registered: 2011-06-10 12:24

2. plsgenomics: PLS analyses for genomics - This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIP-chip analysis.

Development Status : 5 - Production/Stable [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Natural Language : French [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Projection Methods [Filter]
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Activity Percentile: 0.00
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Registered: 2014-10-30 14:27

3. cvrcalc - A Cardiovascular Risk's Calculator by Scores

Development Status : 5 - Production/Stable [Filter]
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00
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Registered: 2013-08-02 12:18

4. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data. http://groups.google.com/group/gadaproject
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-10-09 02:03

5. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary conservation.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-10-26 14:24

6. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Bioinformatics : Visualization [Filter] Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-11-04 09:16

7. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal. Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]

Registered: 2010-05-14 17:13

8. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2011-12-05 20:42

9. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Activity Percentile: 0.00
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Registered: 2011-04-19 11:00

10. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Environment : Console (Text Based) [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : MacOS [Filter] Operating System : POSIX : Linux [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics [Filter]	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2013-12-19 15:12

11. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : German [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00
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Registered: 2017-08-30 21:22

12. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Natural Language : Spanish [Filter]
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Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00
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Registered: 2015-07-04 09:37

13. modEvA - modEvA is an R package for species distribution model evaluation and analysis.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Spatial Data & Statistics : Ecological Analysis [Filter]

Activity Percentile: 0.00
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Registered: 2014-04-04 11:51

14. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Bioinformatics : Visualization [Filter]

Activity Percentile: 0.00
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Registered: 2012-07-12 22:01

15. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Perl [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00
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Registered: 2013-11-21 21:46

16. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
Development Status : 5 - Production/Stable [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2014-02-14 10:16

17. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

Activity Percentile: 0.00
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Registered: 2016-02-18 15:57

18. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Natural Language : French [Filter]
Operating System : Microsoft [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]

Activity Percentile: 0.00
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Registered: 2010-06-25 04:17

19. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
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Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : QTL Mapping [Filter]

Activity Percentile: 0.00
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Registered: 2009-10-07 19:54

47 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1> <2> <3>