5. vegan - Community Ecology Package- 'vegan' is a CRAN package for the analysis of ecological communities. It has tools for analysing ecological diversity, and for the multivariate analysis of communities (NMDS, pCCA, pRDA etc.)
Development Status : 5 - Production/Stable [Filter]
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
7. Range Correlations- Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
8. pi0 estimators- Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.
9. Local Depth- The package "localdepth" contains functions for the evaluation of some Depth functions and their corresponding local versions, namely Local Depths. Simplicial, Ellipsoid and Mahalanobis Depths are implemented for general dimension.