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Topic :: Bioinformatics [Remove This Filter]
21 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Registered: 2013-01-17 23:06 |
1. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/ |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
- Topic : Genetics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-05-19 20:01 |
2. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis. |
- Development Status : 5 - Production/Stable [Filter]
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- Environment : X11 Applications [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-11-20 09:49 |
3. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : French [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database : R Interfaces [Filter]
- Topic : Genetics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2008-07-28 09:03 |
4. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals. |
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- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
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Registered: 2012-11-27 16:58 |
5. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2008-02-20 20:34 |
6. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-01-07 14:13 |
7. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2012-11-27 16:51 |
8. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2008-01-16 22:15 |
9. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : BSD License [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2011-02-02 00:51 |
10. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Regression Models [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-08-22 09:52 |
11. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters. |
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- Intended Audience : Other Audience [Filter]
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- Programming Language : Java [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2011-08-19 15:59 |
12. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data. |
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-10-20 17:09 |
13. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis |
- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2016-04-01 13:46 |
14. diveMove - diveMove is a package with tools to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. It also provides miscellaneous functions for handling location data. |
- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2009-10-22 17:20 |
15. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2014-01-22 14:22 |
16. NameNeedle - Using Needleman-Wunsch to Match Sample Names |
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2014-02-03 16:21 |
17. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages. |
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2010-05-14 17:19 |
18. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed. |
- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2010-05-06 10:59 |
19. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate. |
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- Natural Language : German [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
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Activity Percentile: 0.00 Activity Ranking: 0.00 Registered: 2011-05-18 08:28 |
21 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1> <2>