Software Map
Project Tree
Now limiting view to projects in the following categories:
Intended Audience :: Developers [Remove This Filter]
|
 Topic > Bioinformatics
|
Browse By:
|
33 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. RHRV - Package for carrying out heart rate variability studies of ECG records
|
- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 84.21
Registered: 2010-10-14 10:22 |
1. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : High Performance Computing [Filter]
- Topic : Machine Learning [Filter]
|
Activity Percentile: 0.00
Registered: 2012-08-10 08:48 |
2. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
|
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-10-20 01:21 |
3. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Software Development [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2008-02-20 20:34 |
4. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Database : R Interfaces [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
5. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2019-08-02 18:19 |
6. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
|
Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
7. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-02-02 00:51 |
8. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
|
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Spanish [Filter]
- Operating System : OS Independent [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Time Series [Filter]
|
Activity Percentile: 0.00
Registered: 2010-08-30 08:56 |
9. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
|
Activity Percentile: 0.00
Registered: 2011-05-18 08:28 |
10. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-09-03 21:34 |
11. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Database [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2016-04-01 13:46 |
12. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2016-04-21 23:06 |
13. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
14. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
|
- Development Status : 1 - Planning [Filter]
- Environment : Other Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
|
Activity Percentile: 0.00
Registered: 2010-06-14 20:56 |
15. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2012-04-18 14:21 |
16. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.
|
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-18 10:18 |
17. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
18. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2014-11-28 09:55 |
19. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-02-24 09:24 |
33 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
