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 Topic > Bioinformatics
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53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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Registered: 2011-02-02 00:51 |
1. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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Registered: 2011-08-19 15:59 |
2. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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- Topic : Genetics : Phylogenetics [Filter]
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Registered: 2008-11-07 19:39 |
3. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study.
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Registered: 2011-08-05 14:30 |
4. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Registered: 2013-04-11 08:27 |
5. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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Registered: 2011-05-13 20:48 |
6. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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Registered: 2010-01-08 10:31 |
7. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Registered: 2014-02-03 16:21 |
8. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
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Registered: 2010-06-14 20:56 |
9. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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Registered: 2011-08-17 20:46 |
10. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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Registered: 2008-02-20 20:34 |
11. OrgMassSpecR: Organic Mass Spectrometry - Organic/biological mass spectrometry data analysis. The development version of OrgMassSpecR is on GitHub (https://github.com/OrgMassSpec) and the stable version is on CRAN (https://cran.r-project.org/). The R-Forge repository is an archive.
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Registered: 2009-04-28 20:04 |
12. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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Registered: 2008-07-28 09:03 |
13. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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Registered: 2013-01-17 23:06 |
14. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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Registered: 2012-08-10 08:48 |
15. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Registered: 2014-01-22 14:22 |
16. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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Registered: 2010-06-28 19:28 |
17. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge.
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Registered: 2010-02-09 15:03 |
18. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
19. CRImage - CRImage is a package to process and analyze biological images.
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Registered: 2010-06-27 11:26 |
53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
