Software Map
Project Tree
Now limiting view to projects in the following categories:
Intended Audience :: End Users/Desktop [Remove This Filter]
Topic > Bioinformatics |
Browse By:
|
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. RHRV - Package for carrying out heart rate variability studies of ECG records |
- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 94.12
Registered: 2010-10-14 10:22 |
1. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge. |
- Development Status : 1 - Planning [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Datasets [Filter]
|
Activity Percentile: 0.00
Registered: 2010-02-09 15:03 |
2. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures. |
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
|
Activity Percentile: 0.00
Registered: 2014-02-05 10:27 |
3. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
4. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
5. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2012-04-18 14:21 |
6. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
7. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution. |
- Development Status : 1 - Planning [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
8. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Regression Models [Filter]
|
Activity Percentile: 0.00
Registered: 2009-08-22 09:52 |
9. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-12-15 12:39 |
10. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
|
Registered: 2010-05-14 17:19 |
11. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
12. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Datasets [Filter]
|
Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
13. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Database [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2016-04-01 13:46 |
14. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
15. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Machine Learning : Random Forests [Filter]
|
Activity Percentile: 0.00
Registered: 2015-09-02 17:28 |
16. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
17. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI. |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-18 10:18 |
18. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Database : R Interfaces [Filter]
- Topic : Text [Filter]
|
Activity Percentile: 0.00
Registered: 2012-08-22 01:29 |
19. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : High Performance Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2013-05-29 18:34 |
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>