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 Topic > Bioinformatics
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20 projects in result set.
0. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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- Development Status : 6 - Mature [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 13.33
Registered: 2021-07-15 19:48 |
1. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
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- Development Status : 1 - Planning [Filter]
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- Environment : Win32 (MS Windows) [Filter]
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- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-14 20:56 |
2. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2019-08-02 18:19 |
3. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
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Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
4. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2014-11-28 09:55 |
5. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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- Topic : Genetics [Filter]
- Topic : High Performance Computing [Filter]
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Activity Percentile: 0.00
Registered: 2013-05-29 18:34 |
6. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : Tcl [Filter]
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- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
7. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
8. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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- Development Status : 1 - Planning [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
9. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : R [Filter]
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- Topic : Genetics [Filter]
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Activity Percentile: 0.00
Registered: 2009-09-17 00:13 |
10. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Natural Language : German [Filter]
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Activity Percentile: 0.00
Registered: 2010-02-24 09:24 |
11. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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Activity Percentile: 0.00
Registered: 2012-08-22 01:29 |
12. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2012-11-27 16:51 |
13. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.
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- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : BSD License [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-18 10:18 |
14. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics [Filter]
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
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Registered: 2012-11-27 16:58 |
15. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
16. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Activity Percentile: 0.00
Registered: 2008-02-20 20:34 |
17. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
18. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
19. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
