Software Map
Project Tree
Now limiting view to projects in the following categories:
Programming Language :: R [Remove This Filter]
Topic :: Genetics :: Phylogenetics [Remove This Filter]
License :: OSI Approved :: GNU General Public License (GPL) [Remove This Filter]
Natural Language :: English [Remove This Filter]
7 projects in result set.
0. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
|
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2008-07-23 21:21 |
1. Analysis of Independent Contrasts - The CAIC package provides methods for the comparative analysis of taxa using independent contrasts methods. It reimplements the methods of the CAIC and MacroCAIC programs will implement alternative methods such as those provided in LDAP.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2008-01-31 15:29 |
2. SPecies' LImits by Threshold Statistics - splits contains tools for delimiting species and automated taxonomy at many levels of biological organization (eg. DNA barcoding, morphometrics), top-down (merging phylogenetic and phylogeographic methods) and bottom-up (single samples into >1 groups). Newer versions of the package via the Project Home Page link below.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2009-01-15 14:06 |
3. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : Java [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
4. Phylobase Extension - This package provides classes and methods which help read/write/manipulate branch-annotated phylogenetic trees (SIMMAP-format) and supports for a few other extra phylogenetic tree features (like tree weight).
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-04-26 02:20 |
5. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl
|
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-06-14 14:51 |
6. PhyloOrchard - This holds noteworthy chronograms. It serves as the tree store for the DateLife.org project but is available for anyone to use.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Datasets [Filter]
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-09-17 01:58 |
